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Summarize assay values by groups in colData(se)

Source: R/utils.R
summarize_se_by_coldata.Rd

Summarize assay values by groups in colData(se)

Usage

summarize_se_by_coldata(
  se,
  group_by,
  assay_name = "conc",
  method = c("mean", "median"),
  na.rm = TRUE
)

Arguments

se

SummarizedExperiment object.

group_by

Column defining groups.

assay_name

Assay to summarize.

method

"mean" or "median".

na.rm

Logical.

Value

A matrix of summarized expression.