Dot plot for GO/Pathway output (style 3, generic)

A flexible dot plot for STRING/Pathway enrichment tables.

Usage

plot_GO_dot3(
  GO_df,
  topn = 10,
  label_format = 30,
  group_by = c("fdr", "observed_gene_count", "background_gene_count", "strength",
    "gene_ratio", "genes_mapped", "enrichment_score"),
  x_axis = c("observed_gene_count", "background_gene_count", "strength", "gene_ratio",
    "genes_mapped", "enrichment_score")
)

Arguments

GO_df

A generic enrichment result table.

topn

Number of terms.

label_format

Width for wrapping labels.

x_axis

X-axis metric. One of "observed_gene_count", "background_gene_count", "strength", "gene_ratio", "genes_mapped", "enrichment_score".

Value

A ggplot object.