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Run pairwise DEG comparisons for all conditions except a reference

Source: R/utils.R
get_batch_DEGs.Rd

Run pairwise DEG comparisons for all conditions except a reference

Usage

get_batch_DEGs(se, compare_col = "condition", start_col = 1)

Arguments

se

A SummarizedExperiment object.

compare_col

Column in colData(se) representing conditions.

start_col

Index specifying which condition to use as reference.

Value

A named list of DEG data.frames.