Calculate mean expression per gene per condition

Calculate mean expression per gene per condition

Usage

calc_gene_mean_by_condition(
  se,
  assay_name = "conc",
  method = c("mean", "median"),
  condition_col = "condition"
)

Arguments

se

SummarizedExperiment object.

assay_name

Assay used for mean or median calculation.

method

for calculate mean or median.

condition_col

Column in colData(se) defining conditions.

Value

A numeric matrix of gene-by-condition mean expression.