Skip to contents

EasyProtein

EasyProtein is an R package for streamlined proteomics data analysis and visualization.

Features

  • data import and preprocessing
  • quality control
  • PCA and clustering
  • differential expression analysis
  • pathway enrichment
  • publication-ready plotting

Get started

EasyProtein requires a recent version of R (≥ 4.1) and several CRAN and Bioconductor packages.

Please install the required package managers first:

install.packages(c("devtools", "BiocManager"))

BiocManager::install(c(
  "ComplexHeatmap",
  "edgeR",
  "limma",
  "S4Vectors",
  "Mfuzz",
  "SummarizedExperiment"
))

Then you can install the development version of EasyProtein:

devtools::install_github("yuanlizhanshi/EasyProtein")